Leaderboard
Long run
Add a new variable to compare against observations
The infrastructure to compute errors against observations is in the leaderboard
folder. This folder contains two files: data_sources.jl
, responsible for loading and preprocessing variables of interest, and leaderboard.jl
, which computes error and draw plots. To add a new variable to the comparison, you modify the data_sources.jl
.
Computation
As of now, the leaderboard produces bias plots with the global bias and global root mean squared error (RMSE). These quantities are computed for each month with the first year of the simulation not considered as that is the spinup time. The start date of the simulation is 2008 which means that only the year 2009 is used to compare against observational data.
Add a new variable to the bias plots
There are four functions that you need to modify to add a new variable which are get_sim_var_dict
, get_obs_var_dict
, get_mask_dict
, and get_compare_vars_biases_plot_extrema
. Each function returns a dictionary that must be modified to add a new variable to the leaderboard. The dictionaries are sim_var_dict
, obs_var_dict
, mask_dict
, and compare_vars_biases_plot_extrema
.
To add a variable for the leaderboard, add a key-value pair to the dictionary sim_var_dict
whose key is the short name of the variable and the value is a function that returns a OutputVar
. Any preprocessing is done in the function which includes unit conversion and shifting the dates.
sim_var_dict["et"] =
() -> begin
# Load in variable
sim_var = get(
ClimaAnalysis.SimDir(diagnostics_folder_path),
short_name = "et",
)
# Shift to the first day and subtract one month as preprocessing
sim_var =
ClimaAnalysis.shift_to_start_of_previous_month(sim_var)
return sim_var
end
Then, add a key-value pair to the dictionary obs_var_dict
whose key is the same short name as before and the value is a function that takes in a start date and returns a OutputVar
. Any preprocessing is done in the function.
obs_var_dict["et"] =
(start_date) -> begin
# We use ClimaArtifacts to use a dataset from ILAMB
obs_var = ClimaAnalysis.OutputVar(
ClimaLand.Artifacts.ilamb_dataset_path(;
context = "evspsbl_MODIS_et_0.5x0.5.nc",
),
"et",
# start_date is used to align the dates in the observational data
# with the simulation data
new_start_date = start_date,
# Shift dates to the first day of the month before aligning the dates
shift_by = Dates.firstdayofmonth,
)
# More preprocessing to match the units with the simulation data
ClimaAnalysis.units(obs_var) == "kg/m2/s" &&
(obs_var = ClimaAnalysis.set_units(obs_var, "kg m^-2 s^-1"))
# ClimaAnalysis cannot handle `missing` values, but does support handling NaNs
obs_var = ClimaAnalysis.replace(obs_var, missing => NaN)
return obs_var
end
Observational and simulational data should be preprocessed for dates and units. When using ClimaDiagnostics to report monthly averages from a simulation, monthly averages are output on the first day following the month when the average was computed. For instance, the monthly average corresponding to January 2010 is on the date 1 Feb 2010. Preprocessing is done to shift this date to 1 Jan 2010. When preprocessing data, we follow the convention that the first day corresponds to the monthly average for that month. For observational data, you should check the convention being followed and preprocess the dates if necessary.
For obs_var_dict
, the anonymous function must take in a start date. The start date is used in leaderboard.jl
to adjust the seconds in the OutputVar
to match between start date in the simulation data.
Units should be the same between the simulation and observational data.
Next, add a key-value pair to the dictionary mask_dict
whose key is the same short name as before and the value is a function that takes in a OutputVar
representing simulation data and a OutputVar
representing observational data and returns a masking function or nothing
if no masking function is needed. The masking function is used to correctly normalize the global bias and global RMSE. See the example below where a mask is made using the observational data.
mask_dict["et"] =
(sim_var, obs_var) -> begin
return ClimaAnalysis.make_lonlat_mask(
# We do this to get a `OutputVar` with only two dimensions:
# longitude and latitude
ClimaAnalysis.slice(
obs_var,
time = ClimaAnalysis.times(obs_var) |> first,
);
# Any values that are NaN should be 0.0
set_to_val = isnan,
true_val = 0.0
)
end
Finally, add a key-value pair to the dictionary compare_vars_biases_plot_extrema
whose key is the same short name as before and the value is a tuple of floats which determine the range of the bias plots.
compare_vars_biases_plot_extrema = Dict(
"et" => (-0.00001, 0.00001),
"gpp" => (-8.0, 8.0),
"lwu" => (-40.0, 40.0),
)